Thanks guys!
So after wiring all of them I was thinking maybe I messed up by making the dual motors my Y axis. Normally the long side of the cnc would be considered the X Axis and if I were to expand it down the road, then Y would be the long axis.
However, it's a square table, so I think the argument is mute. I also think from a usability stand point, I'd rather not fight the gantry trying to home/align the machine to my datum point. I could stand at the end of the table in the current configuration and easily access and see where the spindle is in relation to my work.
Besides, if I did decide to expand it down the road, it would be as simple as swapping a couple of wires around.